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Software

This is software I have developed since 2009. It is designed to allow me to perform in vivo two-photon imaging and to analyze the resultant 3D image volumes. It is currently being used in a few labs around Johns Hopkins but is not ready to be distributed to the general public.

Igor Pro software

Map Manager, software to annotate image volume time-series.

Canvas

Vascular Analysis

bAcq2

Python

PyMapManager

Treadmill

Homecage

Fiji plugins

Fiji macros and plugins