Map Manager is software to annotate and analyze 3D image time-series


Features

  • Track 3D annotations in time-series images.
  • Automatically aligns images and annotations across timepoints.
  • Works with any in vivo, ex vivo, and fixed tissue image volumes.

Analysis

  • Easily analyze the dynamics of annotations.
  • Detailed spine intensity analysis.
  • Powerful trajectory analysis.
  • Please see the Gallery for movies and screen shots of Map Manager in action.

Getting started

Extending Map Manager analysis

  • Map Manager - Matlab - A Matlab class library to load, analyze, and plot Map Manager files. Allows for arbitrary new analysis to be easily scripted.
  • PyMapManager - A Python package to load, analyze, and plot Map Manager files. Allows for arbitrary new analysis to be easily scripted.

About

All code and documentation written by Robert Cudmore.